Happybreeding Lab

Publications

Publications

Up to 2024.05 | Happybreeding Lab

2024

  • Zhengyu Xiao, Yulong Chen, Xudong Wang, Qiujie Sun, Tan Tu, Junqi Liu, Chunhong Nie*, Zexia Gao*. Effect of runx2b deficiency in intermuscular bones on the regulatory network of lncRNA-miRNA-mRNA. Comparative Biochemistry and Physiology – Part D: Genomics and Proteomics 49 (2024) 101171.
  • Yue Yu, Shi-Ming Wan a, Shuang-Meng Zhang, Jun-Qi Liu, Ai-Li Sun, Yao Wang, Yong-Fu Zhu, Shu-Xin Gu, Ze-Xia Gao*. Identification of SNPs and candidate genes associated with growth using GWAS and transcriptome analysis in Coilia nasus. Aquaculture, 586: 740777.
  • Yue Yu, Shi-Ming Wan*, Cheng-You Huang, Shuang-Meng Zhang, Ai-Li Sun, Jun-Qi Liu, Shun-Yao Li, Yong-Fu Zhu, Shu-Xin Gu, Ze-Xia Gao*. Combining of GWAS and transcriptome analysis to identify the molecular markers and genetic basis of population-asynchronous ovarian development in Coilia nasus. Zoological Research, Zool. Res. 2024, 45(3): 491−505.

2023

  • Meng Qu#, Yingyi Zhang#, Ze-Xia Gao#(co-first author), Zhixin Zhang#, Yali Liu, Shiming Wan, Xin Wang, Haiyan Yu, Huixian Zhang, Yuhong Liu, Ralf Schneider, Axel Meyer*, Qiang Lin*. The genetic basis of the leafy seadragon’s unique camouflage morphology and avenues for its efficient conservation derived from habitat modeling. Science China Life Sciences, 2023, 6: 1213-1230. (IF:10.372)
  • Qiang Dong#, Chun-Hong Nie#, Ya-Ming Wu, Dong-Yang Zhang, Xu-Dong Wang, Tan Tu, Jian Jin , Zu-Yu Tian, Jun-Qi Liu, Zheng-Yu Xiao, Shi-Ming Wan, Ze-Xia Gao*. Generation of blunt snout bream without intermuscular bones by runx2b gene mutation. Aquaculture, 2023, 567: 739263.
  • Rui-Hai Gan, Zhi Li, Zhong-Wei Wang, Xi-Yin Li, Yang Wang, Xiao-Juan Zhang, Jin-Feng Tong, Yue Wu, Ling-Yun Xia, Ze-Xia Gao*, Li Zhou*, Jian-Fang Gui*. Creation of intermuscular bone-free mutants in amphitriploid gibel carp by editing two duplicated runx2b homeologs. Aquaculture, 2023, 567: 739300.
  • Xue-Mei Xiong#, Wei-Jie Huang#, Qiang Dong, Dong-Yang Zhang, Shi-Ming Wan, Ze-Xia Gao*. Genetic parameter estimates for intermuscular bone trait in grass carp (Ctenopharyngodon idella). Aquaculture, 2023, 563:739011.
  • Dong-Yang Zhang, Xin-Ming Liu, Wei-Jie Huang, Yao Wang, Khan Anwarullah,Li-Fei Luo*, Ze-Xia Gao*. Whole-genome resequencing reveals genetic diversity and signatures of selection in mono-female grass carp (Ctenopharyngodon idella). Aquaculture, 2023, 575: 739816. 
  • Lusha Liu, Qi Liu, Xue Zou, Qiheng Chen, Xungang Wang, Zexia Gao*, Jianping Jiang*. Identification of thyroid hormone response genes in the remodeling of dorsal muscle during Microhyla fissipes metamorphosis. Front. Endocrinol. 14:1099130. doi: 10.3389/fendo.2023.1099130
  • Shuangmeng Zhang, Zisheng Xu, Lifei Luo, Shuxin Gu, Zhen Hu, Shiming Wan*, Zexia Gao*. Genetic Diversity and Population Structure of Coilia nasus Revealed by 2b-RAD Sequencing. Biology 2023, 12, 600. https://doi.org/10.3390/biology12040600.
  • 王施龙,胡红浪,熊雪梅,高泽霞. 遗传改良对世界水产养殖业发展的推动作用. 水产学报, 2023, 47(1): 019103.

2022

  • Chun-Hong Nie†, Shi-Ming Wan†, Yu-Long Chen†, Ann Huysseune, Ya-Ming Wu, JiaJia Zhou, Alexandre Wagner Silva Hilsdorf, Wei-min Wang, Paul Eckhard Witten, Qiang Lin*, Ze-Xia Gao*. Single-cell transcriptomes and runx2b−/− mutants reveal the genetic signatures of intermuscular bone formation in zebrafish. National Science Review, 2022, 9: nwac152, https://doi.org/10.1093/nsr/nwac152.
  • Si-Qi Zhang, Xue-Mei Xiong, Rui-Hui Shi, Li-Fei Luo, Gui-Ying Wang, De-Wen Tang*, Qing Li*, Ze-Xia Gao*. Screening and characterization of sex-specific markers for the hybrid (Megalobrama amblycephala ♀ × Ancherythroculter nigrocauda ♂) based on 2b-RAD and transcriptome sequencing. Aquaculture, 2022, 548: 737704.
  • Xiao-Ru Dong, Shi-Ming Wan, Jia-Jia Zhou, Chun-Hong Nie, Yu-Long Chen, Jing-Han Diao, Ze-Xia Gao*. Functional differentiation of bmp7 genes in zebrafish: bmp7a for dorsal-ventral pattern and bmp7b for melanin synthesis and eye development. Front. Cell Dev. Biol. 2022, 10:838721.
  • Yue Yu, Alexandre Wagner Silva Hilsdorf, Li Zhou, Qiang Lin and Ze-Xia Gao*. Editorial: Genetics and molecular breeding in aquaculture animals. Front. Genet. 13:1071303. doi: 10.3389/fgene.2022.1071303.
  • Li-Fei Luo, Zi-ShengXu, Dan-Yang Li, Zhen Hu & Ze-Xia Gao*. Comparative transcriptome profles of four sexually size dimorphic fsh. Scientific Data, 2022, 9:774.
  • Yaming Wu, Aili Sun, Chunhong Nie, Ze-xia Gao, Shi-Ming Wan*. Functional differentiation of bmp2a and bmp2b genes in zebrafish.Gene Expression Patterns, 2022, 46: 119288.
  • 朱德杰，吴亚明，陈宇龙，高泽霞. 团头鲂咽齿发育相关基因系统进化及其表达分析.华中农业大学学报, 2022, 41(6): 192-200.
  • 黄纬杰,郭向召, 张子豪,董    强,熊雪梅,高泽霞. 草鱼全基因组微卫星特征分析与亲子鉴定. 水产学报, 2022, 46(2): 161−172.

2021

  • Chunyan Li#, Melisa Olave#, Yali Hou#, Geng Qin#, Ralf F Schneider#, Zexia Gao#（共同第一）, Xiaolong Tu, Xin Wang, Furong Qi, Alexander Nater, Andreas F. Kautt, Shiming Wan, Yanhong Zhang, Yali Liu, Huixian Zhang, Bo Zhang, Hao Zhang, Meng Qu, Shuaishuai Liu, Zeyu Chen, Jia Zhong, He Zhang, Lingfeng Meng, Kai Wang, Jianping Yin, Liangmin Huang, Byrappa Venkatesh‡, Axel Meyer*, Xuemei Lu*, Qiang Lin*. Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution. Nature Communications, 2021, 12:1094.
  • Han Liu, Chunhai Chen, Maolin Lv, Ning Liu, Yafei Hu, Hailin Zhang, Erik D. Enbody, Zexia Gao, Leif Andersson*, Weimin Wang*. A chromosome-level assembly of blunt snout bream (Megalobrama amblycephala) genome reveals an expansion of olfactory receptor genes in freshwater fish. Molecular Biology and Evolution, 2021, 38 (10): 4238-4251.
  • Yulong Chen#, Shiming Wan#, Qing Li, Xiaoru Dong, Jinghan Diao, Qing Liao, Gui-Ying Wang, Ze-Xia Gao*. Genome-wide integrated analysis revealed functions of lncRNA-miRNA-mRNA interaction in growth of intermuscular bones in Megalobrama amblycephala. Frontiers in Cell and Developmental Biology, 2021, 8: 603815.
  • Chun-Hong Nie, Na-An Zhang, Yu-Long Chen, Zhen-Xia Chen, Gui-Ying Wang, Qing Li, Ze-Xia Gao*. A comparative genomic database of skeletogenesis genes: from fish to mammals. Comparative Biochemistry and Physiology – Part D: Genomics and Proteomics, 2021, 38: 100796.
  • Chunhong Nie, Shiming Wan, Yulong Chen, Dejie Zhu, Xudong Wang, Xiaoru Dong, Ze-Xia Gao*. Loss of scleraxis leads to distinct reduction of mineralized intermuscular bone in zebrafish. Aquaculture and Fisheries, 2021, 6(2):169-177.
  • Lifang Liu, Yulong Chen, Jinghan Diao, Lifei Luo*, Zexia Gao*. Identification and characterization of novel circRNAs involved in muscle growth of blunt snout bream (Megalobrama amblycephala). International Journal of Molecular Sciences, 2021, 22, 10056.
  • Li-Fei Luo, Zi-Sheng Xu, Eman Abdelwareth Baioumy Elsayed Elgazzar, Hang Du, Dan-Yang Li, Xiao-Yun Zhou*, Ze-Xia Gao*. Comparative transcriptome analysis revealed genes involved in sexual and polyploid growth dimorphisms in loach (Misgurnus anguillicaudatus). Biology, 2021, 10, 935.
  • Jia-Jia Zhou, Yong-Jie Chang, Yu-Long Chen, Xu-Dong Wang, Qing Liao, Rui-Hui Shi and Ze-Xia Gao*. Comparison of myosepta development and transcriptome profiling between blunt snout bream with and tilapia without intermuscular bones. Biology, 2021, 10, 1311.
  • 廖青, 万世明, 王旭东, 高泽霞*. 鱼类I型与II型胶原蛋白基因系统进化及其在有/无肌间骨代表鱼中的表达比较分析. 水生生物学报, 2021, 45(2): 318-326.
  • 王旭东, 聂春红, 高泽霞*. 鱼类肌间骨发育分子调控机制及遗传选育研究进展. 水生生物学报, 2021,  45(3): 680-691.
  • 王旭东，唐雨甜，熊雪梅，周佳佳，李相珊，曹树洪，高泽霞*．团头鲂scxa基因SNP位点与肌间骨数目的关联性分析．华中农业大学学报，2021, 40(4): 149-156．
  • 刘莉芳,罗丽飞,陈宇龙,高泽霞.雌激素受体基因调控团头鲂生长和性腺发育的初步研究.华中农业大学学报，2021, 41(1): 179-185.
  • Jing Chen, Xiuli Chen, Xin Huang, Guanghua Huang, Zexia Gao, Weimin Wang, Han Liu*. Genome-wide analysis of intermuscular bone development reveals changes of key genes expression and signaling pathways in blunt snout bream (Megalobrama amblycephala). Genomics, 2021, 133(1): 654-663.

2020

  • Chun-Hong Nie, Alexandre Wagner Silva Hilsdorf, Shi-Ming Wan, Ze-Xia Gao*. Understanding the development of intermuscular bones in teleost: status and future directions for aquaculture. Reviews in Aquaculture, 2020, 12: 759–772. IF：10.592
  • Shaokui Yi, Li-Fang Liu, Lai-Fang Zhou, Bo-Wen Zhao, Wei-Min Wang, Ze-Xia Gao*. Screening of biomarkers related to ovarian maturation and spawning in blunt snout bream (Megalobrama amblycephala) based on metabolomics and transcriptomics. Marine Biotechnology, 2020, 22:180-193.
  • J. R. S. Nunes, F. Pertille, S. C. S. Andrade§ , C. A. Perazza , P. M. S. Villela,V. M. F. Almeida-Val, Z.-X. Gao , L. L. Coutinho and A. W. S. Hilsdorf. Genome-wide association study reveals genes associated with the absence of intermuscular bones in tambaqui (Colossoma macropomum). Animal Genetics, 2020, 51, 899–909.
  • 常永杰, 周佳佳, 张丽红, 孟佑廉, 高泽霞*. 刀鲚肌间骨新类型的发现. 水生生物学报, 2020, 44(1): 104-111.
  • 李丹阳,罗丽飞,曹文怡,周小云,高泽霞*. 雌激素受体基因对泥鳅雌雄和倍性生长差异的表达调控作用.华中农业大学学报,2020,39(6):164-172．

2019

  • Chun-Hong Nie, Shi-Ming Wan, Yu-Long Liu, Han Liu, Wei-Min Wang, Ze-Xia Gao*. Development of teleost intermuscular bones undergoing intramembranous ossification based on histological-transcriptomic-proteomic data. International Journal of Molecular Sciences, 2019, 20, 4698. IF: 5.923
  • Shi-Ming Wan, Xue-Mei Xiong, Tea Tomljanovic, Yu-Long Chen, Han Liu, Tomislav Treer, Ze-Xia Gao*. Identification and mapping of SNPs associated with number of intermuscular bone in blunt snout bream. Aquaculture, 2019, 507, 75-82. IF：3.225
  • Xue-Mei Xiong, Nicholas Andrew Robinson, Jia-Jia Zhou, Yu-Long Chen, Weimin Wang, Xu-Bo Wang, Ze-Xia Gao*. Genetic parameter estimates for intermuscular bone in blunt snout bream (Megalobrama amblycephala) based on a microsatellite-based pedigree. Aquaculture, 2019, 502: 371–377.
  • Tian Lan, Yu-Long Chen, Yasmeen Gul, Bo-Wen Zhao, Ze-Xia Gao*. Comparative expression analysis of let-7 microRNAs during ovary development in Megalobrama amblycephala. Fish Physiology and Biochemistry, 2019, 45: 1101-1105.
  • 陈宇龙, 张丽红, 周佳佳, 孟佑廉, 高泽霞*. 团头鲂肌腱发育相关基因tnmd/xirp2a的克隆和表达. 华中农业大学学报, 2019, 38(2): 1-8.

2018

  • Ning-Nan Guan, Qiong Zhou*, Tian Lan, Lai-Fang Zhou, Bo-Wen Zhao, Wei-Min Wang, Ze-Xia Gao*. Is the nutritional value of fish fillet related to fish maturation or fish age? Integrated analysis of transcriptomics and metabolomics in blunt snout bream (Megalobrama amblycephala). Cellular Physiology and Biochemistry, 2018, 49:17-39.
  • Wei-Zhuo Zhang, Tian Lan, Chun-Hong Nie, Ning-Nan Guan, Ze-Xia Gao*. Characterization and spatiotemporal expression analysis of nine bone morphogenetic protein family genes during intermuscular bone development in blunt snout bream. Gene, 2018, 642: 116–124. (IF: 3.688)
  • 聂春红，陈祖萱，戴彩娇，万世明，高泽霞*. 不同鱼类肌间骨的骨化模式研究. 水生生物学报，2018, 42(1): 131-137.
  • 关柠楠，兰天，陈宇龙，刘莉芳，周芬，高泽霞*. 团头鲂骨组织细胞系的建立及其生物学特性. 水产学报，2018, 42(4): 511-519.

2017

  • Han Liu#, Chunhai Chen#, Ze-Xia Gao#, Jiumeng Min#, Yongming Gu#, Jianbo Jian#, Xiewu Jiang, Huimin Cai, Ingo Ebersberger, Meng Xu, Xinhui Zhang, Jianwei Chen, Wei Luo, Boxiang Chen, Junhui Chen, Hong Liu, Jiang Li, Ruifang Lai, Mingzhou Bai, Jin Wei, Shaokui Yi, Huanling Wang, Xiaojuan Cao, Xiaoyun Zhou, Yuhua Zhao, Kaijian Wei, Ruibin Yang, Bingnan Liu, Shancen Zhao, Xiaodong Fang, Manfred Schartl*, Xueqiao Qian*, Weimin Wang*. The draft genome of blunt snout bream (Megalobrama amblycephala) reveals the development of intermuscular bone and adaptation to herbivorous diet. GigaScience, 2017, 6(7): 1-13.
  • Shi-Ming Wan, Hong Liu, Bo-Wen Zhao, Chun-Hong Nie, Wei-Min Wang, Ze-Xia Gao*. Construction of a high-density linkage map and fine mapping of QTL for growth and gonad related traits in blunt snout bream. Scientific Reports, 2017, 7: 46509.
  • Chun-Hong Nie, Shi-Ming Wan, Tea Tomljanovic, Tomislav Treer, Chung-Der Hsiao, Wei-Min Wang, Ze-Xia Gao*. Comparative proteomics analysis of teleost intermuscular bones and ribs provides insight into their development. BMC Genomics, 2017, 18:147. (IF: 3.969)
  • Lai-Fang Zhou, Bo-Wen Zhao, Ning-Nan Guan, Wei-Min Wang, Ze-Xia Gao*. Plasma metabolomics profiling for fish maturation in blunt snout bream. Metabolomics, 2017, 13(4): 40.
  • Bo-Wen Zhao, Lai-Fang Zhou, Yu-Long Liu, Shi-Ming Wan, Ze-Xia Gao*. Evolution of fish let-7 microRNAs and their expression correlated to growth development in blunt snout bream. International Journal of Molecular Sciences, 2017, 18(3): 646.
  • Wei Luo, Wei-Min Wang, Shi-Ming Wan, Qiang Lin, Ze-Xia Gao*. Assessment of parental contribution to fast- and slow-growth progenies in the blunt snout bream (Megalobrama amblycephala) based on parentage assignment. Aquaculture, 2017, 472: 23-29.
  • Xue-Mei Xiong, Yu-Long Chen, Li-Fang Liu, Weimin Wang, Nicholas Andrew Robinson*, Ze-Xia Gao*. Estimation of genetic parameters for resistance to Aeromonas hydrophila in blunt snout bream (Megalobrama amblycephala). Aquaculture, 2017, 479: 768-773.
  • 关柠楠, 聂春红, 陈宇龙, 刘莉芳, 高泽霞*. 团头鲂雌核发育群体的肌间骨形态学分析. 水产科学, 2017, 36(5): 596-600.